Papers Acknowledging the TGC

  • Joao Gatica, Vijay Tripathi, Stefan J Green, Célia M. Manaia, Thomas Berendonk, Damiano
    Cacace, Christophe Merlin, Norbert Kreuzinger, Thomas Schwartz, Despo Fatta-Kassinos,
    Luigi Rizzo, Carsten U. Schwermer, Hemda Garelick, Edouard Jurkevitch, and Eddie Cytryn
    Environ. High throughput analysis of integron gene cassettes in wastewater environments. Sci. Technol., Just Accepted Manuscript • DOI: 10.1021/acs.est.6b03188 • Publication Date (Web): 30 Sep 2016
  • Hashimshony T, Senderovich N, Avital G, Klochendler A, de Leeuw Y, Anavy L, Gennert D, Li S, Livak KJ, Rozenblatt-Rosen O, Dor Y, Regev A, Yanai I. CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. Genome Biol. 2016 Apr 28;17(1):77. doi: 10.1186/s13059-016-0938-8.
  • Shemer O, Landau U, Candela H, Zemach A, Eshed Williams L. Competency for shoot regeneration from Arabidopsis root explants is regulated by DNA methylation.Plant Science. 52. 238, 251-261 (September 2015). doi:10.1016/j.plantsci.2015.06.015
  • Weinberg-Shukron A, Abu-Libdeh A, Zhadeh F, Carmel L, Kogot-Levin A, Kamal L, Kanaan M, Zeligson S, Renbaum P, Levy-Lahad E, Zangen D. Combined mineralocorticoid and glucocorticoid deficiency is caused by a novel founder nicotinamide nucleotide transhydrogenase mutation that alters mitochondrial morphology and increases oxidative stress. J Med Genet. 52(9), 636-41 (September 2015). doi: 10.1136/jmedgenet-2015-103078
  • Thompson OA, Snoek LB, Nijveen H, Sterken MG, Volkers RJ, Brenchley R, Van’t Hof A, Bevers RP, Cossins AR, Yanai I, Hajnal A, Schmid T, Perkins JD, Spencer D, Kruglyak L, Andersen EC, Moerman DG, Hillier LW, Kammenga JE, Waterston RH. Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.Genetics. 200(3), 975-89 (July 2015). doi: 10.1534/genetics.115.175950
  • Nicenboim J, Malkinson G,  Lupo T, Asaf L, Sela Y, Mayseless O, Gibbs-Bar L, Senderovich N,Hashimshony T, Shin M, Jerafi-Vider A, Avraham-Davidi I, Krupalnik V, Hofi R, Almog G, Astin JW, Golani O, Ben-Dor S, Crosier PS, Herzog W, Lawson ND, Hanna JH,,Yanai I, and Yaniv K. Lymphatic vessels arise from specialized angioblasts within a venousniche. Nature 522(7554), 56-61 (June 2015).
  • Avrani S, Lindell D. Convergent evolution toward an improved growth rate and a reduced resistance range in Prochlorococcus strains resistant to phage. Proc Natl Acad Sci. 112(17), E2191-2200 (April 2015). doi: 10.1073/pnas.1420347112
  • Kfir N, Lev-Maor G, Glaich O, Alajem A, Datta A, Sze SK, Meshorer E, Ast G. SF3B1 association with chromatin determines splicing outcomes. Cell Reports. 11(4), 618-629 (April 2015). doi:10.1016/j.celrep.2015.03.048
  • Kravtsova-Ivantsiv Y, Shomer I, Cohen-Kaplan V, Snijder B, Superti-Furga G, Gonen H, Sommer T, Ziv T, Admon A, Naroditsky I, Jbara M, Brik A, Pikarsky E, Kwon YT, Doweck I, Ciechanover A. KPC1-mediated upiquitination and proteasomal processing of NF-κB1 p105 to p50 restricts tumor growth. Cell. 161(2), 333-347 (April 2015). doi: 10.1016/j.cell.2015.03.001
  • Hashimshony T, Feder M, Levin M, Hall BK, Yanai I. Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. Nature. 519(7524), 219-222 (March 2015). doi: 10.1038/nature13996
  • Anavy L, Levin M, Khair S, Nakanishi N, Fernandez-Valverde SL, Degnan BM, Yanai I. BLIND ordering of large-scale transcriptomic developmental timecourses. Development. 141(5), 1161-1166 (February 2014). doi:10.1242/dev.105288
  • Vragović K, Sela A, Friedlander-Shani L, Fridman Y, Hacham Y, Holland N, Bartom E, Mockler TC, Savaldi-Goldstein S. Translatome analyses capture of opposing tissue-specific brassinosteroid signals orchestrating root meristem differentiation. Proc Natl Acad Sci. 112(3), 923-8 (January 2015). doi: 10.1073/pnas.1417947112
  • Valenci I, Yonai L, Bar-Yaacov D, Mishmar D, Ben-Zvi A. Parkin modulates heteroplasmy of truncated mtDNA in Caenorhabditis elegans. Mitochondrion. 20, 64-70 (January 2015). doi:10.1016/j.mito.2014.11.001
  • Koton Y, Gordon M, Chalifa-Caspi V, Bisharat N. Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships. Front Microbiol. 15, 803 (January 2015). doi: 10.3389/fmicb.2014.00803
  • Shpilman M, Hollander-Cohen L, Ventura T, Gertler A, Levavi-Sivan B. Production, gene structure and characterization of two orthologs of leptin and a leptin receptor in tilapia. Gen Comp Endoctrinol. 207, 74-85 (October 2014). doi: 10.1016/j.ygcen.2014.05.006
  • Koton Y, Eghbaria S, Gordon M, Chalifa-Caspi V, Bisharat N. Draft genome sequence of fish pathogenic Vibrio vulnificus biotype 2. Genome Announcements. 2(6), e01224-14 (November 2014). doi:10.1128/genomeA.01224-14
  • Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu S, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ,  Rink J, Arendt D, Degnan SM, Degnan BM, Hashimshony T, and Yanai I. The phyletic-transition and the origin of animal body plans. Nature (in press).    
  • Carasso E, Salmon-Divon M, Carmeli Y, Banin E, and Navon-Venezia S. Draft genome sequences of two multidrug-resistant extended-spectrum-β-lactamase-producing Klebsiella pneumoniae strains causing bloodstream infections. Genome Announc. 4(1), pii: e01533-15 (January 2016). doi: 10.1128/genomeA.01533-15  
  • Dray L, Neuhof M, Diamant A, Huchon D. The complete mitochondrial genome of the gilthead seabream Sparus aurata L. (Sparidae). Mitochondrial DNA. 27(1), 781-782 (January 2016). doi: 10.3109/19401736.2014.928861
  • Dray L, Neuhof M, Diamant A, Huchon D. The complete mitochondrial genome of the devil firefish Pterois miles (Bennett, 1828) (Scorpaenidae). Mitochondrial DNA. 27(1), 783-784 (January 2016). doi: 10.3109/19401736.2014.945565
  • Chang ES, Neuhof F, Rubinstein ND, Diamant A, Philippe H, Huchon D, Cartwright P. Genomic insights into the evolutionary origin of Myxozoa with Cnidaria. Proc Natl Acad Sci. 112(48), 14912-14917 (December 2015). doi: 10.1073/pnas.1511468112
  • Levin L, Bar-Yaacov D, Bouskila A, Chorev M, Carmel L, Mishmar D. LEMONS–A tool for the identification of splice junctions in transcriptomes of organisms lacking reference genomes. PLoS one. 10(11), e0143329 (November 2015). doi: 10.1371/journal.pone.0143329
  • Zou H, Tzarfati R, Hübner S, Krugman T, Fahima T, Abbo S, Saranga Y, Korol AB. Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars. BMC Genomics. 16, 777 (October 2015). doi: 10.1186/s12864-015-1996-0
  • Kravchik M, Damodharan S, Stav R, Arazi T. Generation and characterization of a tomato DCL3-silencing mutant. Plant Science. 221-222, 81-89 (May 2014). doi: 10.1016/j.plantsci.2014.02.007
  • Mandel T, Moreau F, Kutsher Y, Fletcher JC, Carles CC, Eshed Williams L. The ERECTA receptor kinase regulates Arapidopsis shoot apical meristem size, phyllotaxy and floral meristem identity. Development. 141(4), 830-841 (February 2014). doi: 10.1242/dev.104687
  • Silver DH, Ben-Elazar S, Bogoslavsky A, and Yanai I. ELOPER: Elongation of paired-end reads as a pre-processing tool to improve de novo genome assembly. Bioinformatics. 29(11), 1455-7 (June 2013). doi: 10.1093/bioinformatics/btt169
  • Bar-Yaacov D, Avital G, Levin L, Richards AL, Hachen N, Rebolledo Jaramillo B, Nekrutenko A, Zarivach R, Mishmar D. RNA-DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA. Genome Res. 23(11), 1789-96 (November 2013). doi: 10.1101/gr.161265.113
  • Grishkevich V, Ben-Elazar S, Hashimshony T, Schott D, Hunter CP, and Yanai I. A genomic bias for genotype-environment interactions in C. elegans. Molecular Systems Biology. 8, 587 (June 2012). doi: 10.1038/msb.2012.19
  • Sabehi G, Shaulov L, Silver DH, Yanai I, Harel A, and Lindell D. A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans. Proc Natl Acad Sci U S A. 109(6), 2037-42 (February 2012). doi: 10.1073/pnas.1115467109
  • Hashimshony T, Wagner F, Sher N, and Yanai I. CEL-Seq: Single cell RNA-Seq by multiplexed linear amplification. Cell Reports. 2(3), 666-673 (September 2012). doi: 10.1016/j.celrep.2012.08.003