Publications

1              Ivanov, G., Klement, E., Gelman, B., Elnekave, E. & Karniely, S. Foot and mouth disease viruses are recurrently introduced to Israel and spread by extensively reared sheep and cattle: Insights from a whole-genome sequence analysis. Virology 590, 109950, doi:10.1016/j.virol.2023.109950 (2024).

2              Zanditenas, E., Trebicz-Geffen, M., Kolli, D., Domínguez-García, L., Farhi, E., Linde, L., Romero, D., Chapman, M., Kolodkin-Gal, I. & Ankri, S. Digestive exophagy of biofilms by intestinal amoeba and its impact on stress tolerance and cytotoxicity. Npj Biofilms Microbi 9, doi:Artn 77 10.1038/S41522-023-00444-X (2023).

3              Yehuda, H., Madrer, N., Goldberg, D., Soreq, H. & Meerson, A. Inversely Regulated Inflammation-Related Processes Mediate Anxiety-Obesity Links in Zebrafish Larvae and Adults. Cells-Basel 12, doi:10.3390/cells12131794 (2023).

4              Shlomit Edri, V. R., Or Ginsburg, Abigail Newman Frisch,  Christophe E. Pierreux, Nadav Sharon,  Shulamit Levenberg. 3D model of mouse embryonic pancreas and endocrine compartment using stem cell-derived mesoderm and pancreatic progenitors.  (2023).

5              Pachauri, S., Zaid, R., Sherkhane, P. D., Easa, J., Viterbo, A., Chet, I., Horwitz, B. A. & Mukherjee, P. K. Comparative Phenotypic, Genomic, and Transcriptomic Analyses of Two Contrasting Strains of the Plant Beneficial Fungus Trichoderma virens. Microbiology spectrum 11, e0302422, doi:10.1128/spectrum.03024-22 (2023).

6              Novoplansky, O., Shnerb, A. B., Marripati, D., Jagadeeshan, S., Abu Shareb, R., Conde-Lopez, C., Zorea, J., Prasad, M., Ben Lulu, T., Yegodayev, K. M., Benafsha, C., Li, Y., Kong, D., Kuo, F., Morris, L. G. T., Kurth, I., Hess, J. & Elkabets, M. Activation of the EGFR/PI3K/AKT pathway limits the efficacy of trametinib treatment in head and neck cancer. Molecular oncology 17, 2618-2636, doi:10.1002/1878-0261.13500 (2023).

7              Maor-Landaw, K., Avidor, I., Rostowsky, N., Salti, B., Smirnov, M., Ofek-Lalzar, M., Levin, L., Brekhman, V. & Lotan, T. The Molecular Mechanisms Employed by the Parasite Myxobolus bejeranoi (Cnidaria: Myxozoa) from Invasion through Sporulation for Successful Proliferation in Its Fish Host. Int J Mol Sci 24, doi:10.3390/ijms241612824 (2023).

8              Wiseman, A., Shabbat, M., Cohen, A., From, I., Samina, Y. A., Levy, E. S., Szer, S., Zeltcer, N., Klement, E. & Pima, Y. Point mutation revealed the resurgence of sub-genotype VII.2 Newcastle disease virus in Israel. Avian Pathol 51, 236-243, doi:10.1080/03079457.2022.2040730 (2022).

9              Volman, Y., Hefetz, R., Galun, E. & Rachmilewitz, J. DNA damage alters EGFR signaling and reprograms cellular response via Mre-11. Sci Rep-Uk 12, doi:Artn 5760 10.1038/S41598-022-09779-5 (2022).

10           Teboul, N., Magder, A., Zilberberg, M. & Peleg, Z. Elucidating the pleiotropic effects of sesame KANADI1 locus on leaf and capsule development. Plant J 110, 88-102, doi:10.1111/tpj.15655 (2022).

11           Shefler, I., Salamon, P., Zitman-Gal, T. & Mekori, Y. A. Tumor-Derived Extracellular Vesicles Induce CCL18 Production by Mast Cells: A Possible Link to Angiogenesis. Cells-Basel 11, doi:Artn 353 10.3390/Cells11030353 (2022).

12           Rozenblat, R., Tovin, A., Zada, D., Lebenthal-Loinger, I., Lerer-Goldshtein, T. & Appelbaum, L. Genetic and Neurological Deficiencies in the Visual System of mct8 Mutant Zebrafish. Int J Mol Sci 23, doi:Artn 2464 10.3390/Ijms23052464 (2022).

13           Rosenberg, Y., Simon-Blecher, N., Lalzar, M., Yam, R., Shemesh, A., Alon, S., Perna, G., Cardenas, A., Voolstra, C. R., Miller, D. J. & Levy, O. Urbanization comprehensively impairs biological rhythms in coral holobionts. Global Change Biol 28, 3349-3364, doi:10.1111/gcb.16144 (2022).

14           Novosolov, M., Yahalomi, D., Chang, E. S., Fiala, I., Cartwright, P. & Huchon, D. The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes. Genome biology and evolution 14, doi:10.1093/gbe/evac112 (2022).

15           Melamed, D., Nov, Y., Malik, A., Yakass, M. B., Bolotin, E., Shemer, R., Hiadzi, E. K., Skorecki, K. L. & Livnat, A. De novo mutation rates at the single-mutation resolution in a human HBB gene region associated with adaptation and genetic disease. Genome Res 32, 488-498, doi:10.1101/gr.276103.121 (2022).

16           Lavenda-Grosberg, D., Lalzar, M., Leser, N., Yaseen, A., Malik, A., Maroun, M., Barki-Harrington, L. & Wagner, S. Acute social isolation and regrouping cause short- and long-term molecular changes in the rat medial amygdala. Mol Psychiatr 27, 886-895, doi:10.1038/s41380-021-01342-4 (2022).

17           Khateeb, D., Gabrieli, T., Sofer, B., Hattar, A., Cordela, S., Chaouat, A., Spivak, I., Lejbkowicz, I., Almog, R., Mandelboim, M. & Bar-On, Y. SARS-CoV-2 variants with reduced infectivity and varied sensitivity to the BNT162b2 vaccine are developed during the course of infection. Plos Pathog 18, doi:ARTN e1010242 10.1371/journal.ppat.1010242 (2022).

18           Furth-Lavi, J., Hija, A., Tornovsky-Babeay, S., Mazouz, A., Dahan, T., Stolovich-Rain, M., Klochendler, A., Dor, Y., Avrahami, D. & Glaser, B. Glycemic control releases regenerative potential of pancreatic beta cells blocked by severe hyperglycemia. Cell Rep 41, 111719, doi:10.1016/j.celrep.2022.111719 (2022).

19           Douiev, L., Miller, C., Keller, G., Benyamini, H., Abu-Libdeh, B. & Saada, A. Replicative Stress Coincides with Impaired Nuclear DNA Damage Response in COX4-1 Deficiency. Int J Mol Sci 23, doi:Artn 4149 10.3390/Ijms23084149 (2022).

20           de Miranda, J. R., Brettell, L. E., Chejanovsky, N., Childers, A. K., Dalmon, A., Deboutte, W., de Graaf, D. C., Doublet, V., Gebremedhn, H., Genersch, E., Gisder, S., Granberg, F., Haddad, N. J., Kaden, R., Manley, R., Matthijnssens, J., Meeus, I., Migdadi, H., Milbrath, M. O., Mondet, F., Remnant, E. J., Roberts, J. M. K., Ryabov, E. V., Sela, N., Smagghe, G., Somanathan, H., Wilfert, L., Wright, O. N., Martin, S. J. & Ball, B. V. Cold case: The disappearance of Egypt bee virus, a fourth distinct master strain of deformed wing virus linked to honeybee mortality in 1970's Egypt. Virol J 19, doi:Artn 12 10.1186/S12985-022-01740-2 (2022).

21           Campo, A., Nitzan, T., Slosman, T., Doron-Faigenboim, A., D'Cotta, H., Baroiller, J. F. & Cnaani, A. Different transcriptomic architecture of the gill epithelia in Nile and Mozambique tilapia after salinity challenge. Comp Biochem Phys D 41, doi:Artn 100927 10.1016/J.Cbd.2021.100927 (2022).

22           Boocholez, H., Marques, F. C., Levine, A., Roitenberg, N., Siddiqui, A. A., Zhu, H. D., Moll, L., Grushko, D., Haimson, R. B., Elami, T. & Cohen, E. Neuropeptide signaling and SKN-1 orchestrate differential responses of the proteostasis network to dissimilar proteotoxic insults. Cell Rep 38, doi:Artn 110350 10.1016/J.Celrep.2022.110350 (2022).

23           Bar-Sadeh, B., Amichai, O. E., Pnueli, L., Begum, K., Leeman, G., Emes, R. D., Stoger, R., Bentley, G. R. & Melamed, P. Epigenetic regulation of 5 alpha reductase-1 underlies adaptive plasticity of reproductive function and pubertal timing. Bmc Biol 20, doi:Artn 11 10.1186/S12915-021-01219-6 (2022).

24           Andrawes, N., Weissman, Z., Pinsky, M., Moshe, S., Berman, J. & Kornitzer, D. Regulation of heme utilization and homeostasis in Candida albicans. PLoS genetics 18, e1010390, doi:10.1371/journal.pgen.1010390 (2022).

25           Ali-Nasser, T., Zayit-Soudry, S., Banin, E., Sharon, D. & Ben-Yosef, T. Autosomal dominant retinitis pigmentosa with incomplete penetrance due to an intronic mutation of the PRPF31 gene. Molecular vision 28, 359-368 (2022).

26           Yaseen, W., Kraft-Sheleg, O., Zaffryar-Eilot, S., Melamed, S., Sun, C. Y., Millay, D. P. & Hasson, P. Fibroblast fusion to the muscle fiber regulates myotendinous junction formation. Nat Commun 12, doi:Artn 3852 10.1038/S41467-021-24159-9 (2021).

27           Titelboim, D., Thangarjan, S., Raposo, D., Morard, R., Kucera, M., Ashckenazi-Polivoda, S., Almogi-Labin, A., Herut, B., Manda, S., Abramovich, S., Gold, D. A. & Abdu, U. The transcriptomic signature of cold and heat stress in benthic foraminifera-Implications for range expansions of marine calcifiers. Funct Ecol 35, 2679-2690, doi:10.1111/1365-2435.13929 (2021).

28           Shemer, Y., Mekies, L. N., Ben Jehuda, R., Baskin, P., Shulman, R., Eisen, B., Regev, D., Arbustini, E., Gerull, B., Gherghiceanu, M., Gottlieb, E., Arad, M. & Binah, O. Investigating LMNA-Related Dilated Cardiomyopathy Using Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes. Int J Mol Sci 22, doi:Artn 7874 10.3390/Ijms22157874 (2021).

29           Shani, O., Raz, Y., Monteran, L., Scharff, Y., Levi-Galibov, O., Megides, O., Shacham, H., Cohen, N., Silverbush, D., Avivi, C., Sharan, R., Madi, A., Scherz-Shouval, R., Barshack, I., Tsarfaty, I. & Erez, N. Evolution of fibroblasts in the lung metastatic microenvironment is driven by stage-specific transcriptional platicity. Elife 10, doi:ARTN e60745 10.7954/eLife.60745 (2021).

30           Pnueli, L., Shalev, D., Refael, T., David, C., Boehm, U. & Melamed, P. Proliferating primary pituitary cells as a model for studying regulation of gonadotrope chromatin and gene expression. Mol Cell Endocrinol 533, doi:Artn 111349 10.1016/J.Mce.2021.111349 (2021).

31           Meijer, S. E., Harel, N., Ben-Ami, R., Nahari, M., Yakubovsky, M., Oster, H. S., Kolomansky, A., Halutz, O., Laskar, O., Henig, O., Stern, A. & Paran, Y. Unraveling a Nosocomial Outbreak of COVID-19: The Role of Whole-Genome Sequence Analysis. Open Forum Infect Di 8, doi:ARTN ofab120 10.1093/ofid/ofab120 (2021).

32           Levi, O. & Arava, Y. S. Pseudouridine-mediated translation control of mRNA by methionine aminoacyl tRNA synthetase. Nucleic Acids Res 49, 432-443, doi:10.1093/nar/gkaa1178 (2021).

33           Lee, W. D., Pirona, A. C., Sarvin, B., Stern, A., Nevo-Dinur, K., Besser, E., Sarvin, N., Lagziel, S., Mukha, D., Raz, S., Aizenshtein, E. & Shlomi, T. Tumor Reliance on Cytosolic versus Mitochondrial One-Carbon Flux Depends on Folate Availability. Cell Metab 33, 190-+, doi:10.1016/j.cmet.2020.12.002 (2021).

34           Landau, S., Newman, A., Edri, S., Michael, I., Ben-Shaul, S., Shandalov, Y., Ben-Arye, T., Kaur, P., Zheng, M. H. & Levenberg, S. Investigating lymphangiogenesis in vitro and in vivo using engineered human lymphatic vessel networks. P Natl Acad Sci USA 118, doi:ARTN e2101931118 10.1073/pnas.2101931118 (2021).

35           Kustin, T., Harel, N., Finkel, U., Perchik, S., Harari, S., Tahor, M., Caspi, I., Levy, R., Leshchinsky, M., Dror, S. K., Bergerzon, G., Gadban, H., Gadban, F., Eliassian, E., Shimron, O., Saleh, L., Ben-Zvi, H., Taraday, E. K., Amichay, D., Ben-Dor, A., Sagas, D., Strauss, M., Avni, Y. S., Huppert, A., Kepten, E., Balicer, R. D., Netzer, D., Ben-Shachar, S. & Stern, A. Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2-mRNA-vaccinated individuals. Nat Med 27, 1379-+, doi:10.1038/s41591-021-01413-7 (2021).

36           Kumarasamy, M. & Sosnik, A. Heterocellular spheroids of the neurovascular blood-brain barrier as a platform for personalized nanoneuromedicine. Iscience 24, doi:Artn 102183 10.1016/J.Isci.2021.102183 (2021).

37           Kaufmann, B., Willinger, O., Kikuchi, N., Navon, N., Kermas, L., Goldberg, S. & Amit, R. An Oligo-Library-Based Approach for Mapping DNA-DNA Triplex Interactions In Vitro. Acs Synth Biol 10, 1808-1820, doi:10.1021/acssynbio.1c00122 (2021).

38           Katz, S., Avrani, S., Yavneh, M., Hilau, S., Gross, J. & Hershberg, R. Dynamics of Adaptation During Three Years of Evolution Under Long-Term Stationary Phase. Mol Biol Evol 38, 2778-2790, doi:10.1093/molbev/msab067 (2021).

39           Gordon, T., Upadhyay, A. K., Manni, L., Huchon, D. & Shenkar, N. And Then There Were Three horizontal ellipsis : Extreme Regeneration Ability of the Solitary Chordate Polycarpa mytiligera. Front Cell Dev Biol 9, doi:Artn 652466 10.3389/Fcell.2021.652466 (2021).

40           Gancz, A., Kondratyeva, K., Cohen-Eli, D. & Navon-Venezia, S. Genomics and Virulence of Klebsiella pneumoniae Kpnu95 ST1412 Harboring a Novel Incf Plasmid Encoding Blactx-M-15 and Qnrs1 Causing Community Urinary Tract Infection. Microorganisms 9, doi:ARTN 1022 10.3390/microorganisms9051022 (2021).

41           Gamaev, L., Mizrahi, L., Friehmann, T., Rosenberg, N., Pappo, O., Olam, D., Zeira, E., Halpern, K. B., Caruso, S., Zucman-Rossi, J., Axelrod, J. H., Galun, E. & Goldenberg, D. S. The pro-oncogenic effect of the lncRNA H19 in the development of chronic inflammation-mediated hepatocellular carcinoma. Oncogene 40, 127-139, doi:10.1038/s41388-020-01513-7 (2021).

42           Friedman, N., Jacob-Hirsch, J., Drori, Y., Eran, E., Kol, N., Nayshool, O., Mendelson, E., Rechavi, G. & Mandelboim, M. Transcriptomic profiling and genomic mutational analysis of Human coronavirus (HCoV)-229E-infected human cells. Plos One 16, doi:ARTN e0247128 10.1371/journal.pone.0247128 (2021).

43           Dvir, S., Argoetti, A., Lesnik, C., Roytblat, M., Shriki, K., Amit, M., Hashimshony, T. & Mandel-Gutfreund, Y. Uncovering the RNA-binding protein landscape in the pluripotency network of human embryonic stem cells. Cell Rep 35, doi:Artn 109198 10.1016/J.Celrep.2021.109198 (2021).

44           Douiev, L., Miller, C., Ruppo, S., Benyamini, H., Abu-Libdeh, B. & Saada, A. Upregulation of COX4-2 via HIF-1 alpha in Mitochondrial COX4-1 Deficiency. Cells-Basel 10, doi:Artn 452 10.3390/Cells10020452 (2021).

45           Dolitzky, A., Shapira, G., Grisaru-Tal, S., Hazut, I., Avlas, S., Gordon, Y., Itan, M., Shomron, N. & Munitz, A. Transcriptional Profiling of Mouse Eosinophils Identifies Distinct Gene Signatures Following Cellular Activation. Front Immunol 12, doi:Artn 802839 10.3389/Fimmu.2021.802839 (2021).

46           Datta, M. S., Yelin, I., Hochwald, O., Kassis, I., Borenstein-Levin, L., Kugelman, A. & Kishony, R. Rapid methicillin resistance diversification in Staphylococcus epidermidis colonizing human neonates. Nat Commun 12, doi:Artn 6062 10.1038/S41467-021-26392-8 (2021).

47           Beckerman, M., Harel, C., Michael, I., Klip, A., Bilan, P. J., Gallagher, E. J., LeRoith, D., Lewis, E. C., Karnieli, E. & Levenberg, S. GLUT4-overexpressing engineered muscle constructs as a therapeutic platform to normalize glycemia in diabetic mice. Sci Adv 7, doi:ARTN eabg3947 10.1126/sciadv.abg3947 (2021).

48           Bar-Lev, Y., Senden, E., Pasmanik-Chor, M. & Sapir, Y. De novo transcriptome characterization of Iris atropurpurea (the Royal Iris) and phylogenetic analysis of MADS-box and R2R3-MYB gene families (vol 11, 16246, 2021). Sci Rep-Uk 11, doi:Artn 18154 10.1038/S41598-021-97920-1 (2021).

49           Ashkenazy, H., Avram, O., Ryvkin, A., Roitburd-Berman, A., Weiss-Ottolenghi, Y., Hada-Neeman, S., Gershoni, J. M. & Pupko, T. Motifier: An IgOme Profiler Based on Peptide Motifs Using Machine Learning. J Mol Biol 433, doi:Artn 167071 10.1016/J.Jmb.2021.167071 (2021).

50           Altshuler, A., Amitai-Lange, A., Tarazi, N., Dey, S., Strinkovsky, L., Hadad-Porat, S., Bhattacharya, S., Nasser, W., Imeri, J., Ben-David, G., Abboud-Jarrous, G., Tiosano, B., Berkowitz, E., Karin, N., Savir, Y. & Shalom-Feuerstein, R. Discrete limbal epithelial stem cell populations mediate corneal homeostasis and wound healing. Cell Stem Cell, doi:10.1016/j.stem.2021.04.003 (2021).

51           Ackerman-Lavert, M., Fridman, Y., Matosevich, R., Khandal, H., Friedlander-Shani, L., Vragovic, K., Ben El, R., Horev, G., Tarkowska, D., Efroni, I. & Savaldi-Goldstein, S. Auxin requirements for a meristematic state in roots depend on a dual brassinosteroid function. Curr Biol 31, 4462-+, doi:10.1016/j.cub.2021.07.075 (2021).

52           Abergel, Z., Shaked, M., Shukla, V., Wu, Z. X. & Gross, E. The phosphatidylinositol transfer protein PITP-1 facilitates fast recovery of eating behavior after hypoxia in the nematode Caenorhabditis elegans. Faseb J 35, doi:ARTN e21202 10.1096/fj.202000704R (2021).

53           Simaan, H., Shalaby, S., Hatoel, M., Karinski, O., Goldshmidt-Tran, O. & Horwitz, B. A. The AP-1-like transcription factor ChAP1 balances tolerance and cell death in the response of the maize pathogen Cochliobolus heterostrophus to a plant phenolic. Curr Genet 66, 187-203, doi:10.1007/s00294-019-01012-7 (2020).

54           Saadi, E., Sood, R., Dromi, I., Srouji, R., Abu Hatoum, O., Tal, S. & Barki-Harrington, L. Limited Proteolysis of Cyclooxygenase-2 Enhances Cell Proliferation. Int J Mol Sci 21, doi:Artn 3195 10.3390/Ijms21093195 (2020).

55           Panov, J., Simchi, L., Feuermann, Y. & Kaphzan, H. Bioinformatics Analyses of the Transcriptome Reveal Ube3a-Dependent Effects on Mitochondrial-Related Pathways. Int J Mol Sci 21, doi:Artn 4156 10.3390/Ijms21114156 (2020).

56           Naipauer, J., Salyakina, D., Journo, G., Rosario, S., Williams, S., Abba, M., Shamay, M. & Mesri, E. A. High-throughput sequencing analysis of a "hit and run" cell and animal model of KSHV tumorigenesis. Plos Pathog 16, e1008589, doi:10.1371/journal.ppat.1008589 (2020).

57           Miller, D., Martin, M. A., Harel, N., Tirosh, O., Kustin, T., Meir, M., Sorek, N., Gefen-Halevi, S., Amit, S., Vorontsov, O., Shaag, A., Wolf, D., Peretz, A., Shemer-Avni, Y., Roif-Kaminsky, D., Kopelman, N. M., Huppert, A., Koelle, K. & Stern, A. Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel. Nat Commun 11, doi:Artn 5518 10.1038/S41467-020-19248-0 (2020).

58           Maymon, M., Sela, N., Shpatz, U., Galpaz, N. & Freeman, S. The origin and current situation of Fusarium oxysporum f. sp. cubense tropical race 4 in Israel and the Middle East. Sci Rep-Uk 10, doi:Artn 1590 10.1038/S41598-020-58378-9 (2020).

59           Luria, N., Smith, E., Lachman, O., Laskar, O., Sela, N. & Dombrovsky, A. Isolation and characterization of a novel cripavirus, the first Dicistroviridae family member infecting the cotton mealybug Phenacoccus solenopsis. Arch Virol 165, 1987-1994, doi:10.1007/s00705-020-04702-7 (2020).

60           Levitas-Djerbi, T., Sagi, D., Lebenthal-Loinger, I., Lerer-Goldshtein, T. & Appelbaum, L. Neurotensin Enhances Locomotor Activity and Arousal and Inhibits Melanin-Concentrating Hormone Signaling. Neuroendocrinology 110, 35-49, doi:10.1159/000500590 (2020).

61           Levin, M., Zalts, H., Mostov, N., Hashimshony, T. & Yanai, I. Gene expression dynamics are a proxy for selective pressures on alternatively polyadenylated isoforms. Nucleic Acids Res 48, 5926-5938, doi:10.1093/nar/gkaa359 (2020).

62           Lanza, A. R. & Seaver, E. C. Functional evidence that Activin/Nodal signaling is required for establishing the dorsal-ventral axis in the annelid Capitella teleta. Development 147, doi:ARTN dev189373 10.1242/dev.189373 (2020).

63           Kondratyeva, K., Salmon-Divon, M. & Navon-Venezia, S. Meta-analysis of Pandemic Escherichia coli ST131 Plasmidome Proves Restricted Plasmid-clade Associations. Sci Rep-Uk 10, doi:Artn 36 10.1038/S41598-019-56763-7 (2020).

64           Klap, C., Luria, N., Smith, E., Hadad, L., Bakelman, E., Sela, N., Belausov, E., Lachman, O., Leibman, D. & Dombrovsky, A. Tomato Brown Rugose Fruit Virus Contributes to Enhanced Pepino Mosaic Virus Titers in Tomato Plants. Viruses-Basel 12, doi:Artn 879 10.3390/V12080879 (2020).

65           Karniely, S., Hamed, F., Gelman, B., King, R., Storm, N., Eyngor, E. & Tov, B. E. First isolation of foot and mouth disease virus from wild boars in the Middle East. Transbound Emerg Dis 67, 1725-1729, doi:10.1111/tbed.13507 (2020).

66           Kamer, I., Steuerman, Y., Daniel-Meshulam, I., Perry, G., Izraeli, S., Perelman, M., Golan, N., Simansky, D., Barshack, I., Ben Nun, A., Gottfried, T., Onn, A., Gat-Viks, I. & Bar, J. Predicting brain metastasis in early stage non-small cell lung cancer patients by gene expression profiling. Transl Lung Cancer R 9, 682-+, doi:10.21037/tlcr-19-477 (2020).

67           Hevroni, G., Flores-Uribe, J., Beja, O. & Philosof, A. Seasonal and diel patterns of abundance and activity of viruses in the Red Sea. P Natl Acad Sci USA 117, 29738-29747, doi:10.1073/pnas.2010783117 (2020).

68           Goncalves, I. L., Tal, S., Barki-Harrington, L. & Sapir, A. Conserved statin-mediated activation of the p38-MAPK pathway protects Caenorhabditis elegans from the cholesterol-independent effects of statins. Mol Metab 39, doi:Artn 101003 10.1016/J.Molmet.2020.101003 (2020).

69           Giladi, Y., Hadad, L., Luria, N., Cranshaw, W., Lachman, O. & Dombrovsky, A. First Report of Beet Curly Top Virus Infecting Cannabis sativa in Western Colorado. Plant Dis 104, 999-999,  doi:10.1094/Pdis-08-19-1656-Pdn (2020).

70           Gabay Yehezkely, R., Zaffryar-Eilot, S., Kaganovsky, A., Fainshtain Malka, N., Aviram, R., Livneh, I. & Hasson, P. Intracellular Role for the Matrix-Modifying Enzyme Lox in Regulating Transcription Factor Subcellular Localization and Activity in Muscle Regeneration. Dev Cell 53, 406-417 e405, doi:10.1016/j.devcel.2020.04.002 (2020).

71           Fourier, N., Zolty, M., Azriel, A., Tedesco, D. & Levi, B. Z. MafK Mediates Chromatin Remodeling to Silence IRF8 Expression in Non-immune Cells in a Cell Type-SpecificManner. J Mol Biol 432, 4544-4560, doi:10.1016/j.jmb.2020.06.005 (2020).

72           Carmel, M., Michaelovsky, E., Weinberger, R., Frisch, A., Mekori-Domachevsky, E., Gothelf, D. & Weizman, A. Differential methylation of imprinting genes and MHC locus in 22q11.2 deletion syndrome-related schizophrenia spectrum disorders. World J Biol Psychiatry, 1-12, doi:10.1080/15622975.2020.1747113 (2020).

73           Brownstein, Z., Gulsuner, S., Walsh, T., Martins, F. T. A., Taiber, S., Isakov, O., Lee, M. K., Bordeynik-Cohen, M., Birkan, M., Chang, W., Casadei, S., Danial-Farran, N., Abu-Rayyan, A., Carlson, R., Kamal, L., Arnthorsson, A. O., Sokolov, M., Gilony, D., Lipschitz, N., Frydman, M., Davidov, B., Macarov, M., Sagi, M., Vinkler, C., Poran, H., Sharony, R., Samra, N., Zvi, N., Baris-Feldman, H., Singer, A., Handzel, O., Hertzano, R., Ali-Naffaa, D., Ruhrman-Shahar, N., Madgar, O., Sofrin-Drucker, E., Peleg, A., Khayat, M., Shohat, M., Basel-Salmon, L., Pras, E., Lev, D., Wolf, M., Steingrimsson, E., Shomron, N., Kelley, M. W., Kanaan, M. N., Allon-Shalev, S., King, M. C. & Avraham, K. B. Spectrum of genes for inherited hearing loss in the Israeli Jewish population, including the novel human deafness geneATOH1. Clin Genet 98, 353-364, doi:10.1111/cge.13817 (2020).

74           Benyamini, H., Kling, Y., Yakovlev, L., Cohen, M. B., Nevo, Y., Elgavish, S., Harazi, A., Argov, Z., Sela, I. & Mitrani-Rosenbaum, S. Upregulation of Hallmark Muscle Genes Protects Gne(M743T)(/M743T) Mutated Knock-In Mice From Kidney and Muscle Phenotype. J Neuromuscular Dis 7, 119-136, doi:10.3233/Jnd-190461 (2020).

75           Ben-Assa, N., Coyne, M. J., Fomenkov, A., Livny, J., Robins, W. P., Muniesa, M., Carey, V., Carasso, S., Gefen, T., Jofre, J., Roberts, R. J., Comstock, L. E. & Geva-Zatorsky, N. Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis. Nucleic Acids Res 48, 11040-11053, doi:10.1093/nar/gkaa824 (2020).

76           Avrani, S., Katz, S. & Hershberg, R. Adaptations Accumulated under Prolonged Resource Exhaustion Are Highly Transient. Msphere 5, doi:ARTN e00388-20 10.1128/mSphere.00388-20 (2020).

77           Avraham, S., Abu-Sharki, S., Shofti, R., Haas, T., Korin, B., Kalfon, R., Friedman, T., Shiran, A., Saliba, W., Shaked, Y. & Aronheim, A. Early Cardiac Remodeling Promotes Tumor Growth and Metastasis. Circulation 142, 670-683, doi:10.1161/CIRCULATIONAHA.120.046471 (2020).

78           Yanai, I. & Hashimshony, T. CEL-Seq2-Single-Cell RNA Sequencing by Multiplexed Linear Amplification. Methods Mol Biol 1979, 45-56, doi:10.1007/978-1-4939-9240-9_4 (2019).

79           Werbner, M., Barsheshet, Y., Werbner, N., Zigdon, M., Averbuch, I., Ziv, O., Brant, B., Elliott, E., Gelberg, S., Titelbaum, M., Koren, O. & Avni, O. Social-Stress-Responsive Microbiota Induces Stimulation of Self-Reactive Effector T Helper Cells. Msystems 4, doi:ARTN e00292-18 10.1128/mSystems.00292-18 (2019).

80           Shalit-Kaneh, A., Eviatar-Ribak, T., Horev, G., Suss, N., Aloni, R., Eshed, Y. & Lifschitz, E. The flowering hormone florigen accelerates secondary cell wall biogenesis to harmonize vascular maturation with reproductive development. P Natl Acad Sci USA 116, 16127-16136, doi:10.1073/pnas.1906405116 (2019).

81           Shaar-Moshe, L., Hayouka, R., Roessner, U. & Peleg, Z. Phenotypic and metabolic plasticity shapes life-history strategies under combinations of abiotic stresses. Plant Direct 3, doi:Artn 113 10.1002/Pld3.113 (2019).

82           Reichman, H., Itan, M., Rozenberg, P., Yarmolovski, T., Brazowski, E., Varol, C., Gluck, N., Shapira, S., Arber, N., Qimron, U., Karo-Atar, D., Lee, J. J. & Munitz, A. Activated Eosinophils Exert Antitumorigenic Activities in Colorectal Cancer. Cancer Immunol Res 7, 388-400, doi:10.1158/2326-6066.CIR-18-0494 (2019).

83           Nitzan, T., Kokou, F., Doron-Faigenboim, A., Slosman, T., Biran, J., Mizrahi, I., Zak, T., Benet, A. & Cnaani, A. Transcriptome Analysis Reveals Common and Differential Response to Low Temperature Exposure Between Tolerant and Sensitive Blue Tilapia (Oreochromis aureus). Front Genet 10, doi:Artn 100 10.3389/Fgene.2019.00100 (2019).

84           Luria, N., Smith, E., Sela, N., Koren, A., Lachman, O. & Dombrovsky, A. Insights Into a Watermelon Virome Contribute to Monitoring Distribution of Whitefly-Borne Viruses. Phytobiomes J 3, 61-70, doi:10.1094/Pbiomes-07-18-0034-R (2019).

85           Lukic, I., Getselter, D., Ziv, O., Oron, O., Reuveni, E., Koren, O. & Elliott, E. Antidepressants affect gut microbiota and Ruminococcus flavefaciens is able to abolish their effects on depressive-like behavior. Transl Psychiat 9, doi:Artn 133 10.1038/S41398-019-0466-X (2019).

86           Levin, S., Sela, N., Erez, T., Nestel, D., Pettis, J., Neumann, P. & Chejanovsky, N. New Viruses from the Ectoparasite Mite Varroa destructor Infesting Apis mellifera and Apis cerana. Viruses-Basel 11, doi:Artn 94 10.3390/V11020094 (2019).

87           Levi, O. & Arava, Y. mRNA association by aminoacyl tRNA synthetase occurs at a putative anticodon mimic and autoregulates translation in response to tRNA levels. Plos Biol 17, doi:ARTN e3000274 10.1371/journal.pbio.3000274 (2019).

88           Hadad, L., Luria, N., Smith, E., Sela, N., Lachman, O. & Dombrovsky, A. Lettuce Chlorosis Virus Disease: A New Threat to Cannabis Production. Viruses-Basel 11, doi:Artn 802 10.3390/V11090802 (2019).

89           Haas, R., Horev, G., Lipkin, E., Kesten, I., Portnoy, M., Buhnik-Rosenblau, K., Soller, M. & Kashi, Y. Mapping Ethanol Tolerance in Budding Yeast Reveals High Genetic Variation in a Wild Isolate. Front Genet 10, doi:Artn 998 10.3389/Fgene.2019.00998 (2019).

90           Glaich, O., Parikh, S., Bell, R. E., Mekahel, K., Donyo, M., Leader, Y., Shayevitch, R., Sheinboim, D., Yannai, S., Hollander, D., Melamed, Z., Lev-Maor, G., Ast, G. & Levy, C. DNA methylation directs microRNA biogenesis in mammalian cells. Nat Commun 10, doi:Artn 5657 10.1038/S41467-019-13527-1 (2019).

91           Flint Brodsly, N., Bitman-Lotan, E., Boico, O., Shafat, A., Monastirioti, M., Gessler, M., Delidakis, C., Rincon-Arano, H. & Orian, A. The transcription factor Hey and nuclear lamins specify and maintain cell identity. Elife 8, doi:10.7554/eLife.44745 (2019).

92           Feldman, A., Saleh, A., Pnueli, L., Qiao, S., Shlomi, T., Boehm, U. & Melamed, P. Sensitivity of pituitary gonadotropes to hyperglycemia leads to epigenetic aberrations and reduced follicle-stimulating hormone levels. Faseb J 33, 1020-1032, doi:10.1096/fj.201800943R (2019).

93           Birger, A., Ben-Dor, I., Ottolenghi, M., Turetsky, T., Gil, Y., Sweetat, S., Perez, L., Belzer, V., Casden, N., Steiner, D., Izrael, M., Galun, E., Feldman, E., Behar, O. & Reubinoff, B. Human iPSC-derived astrocytes from ALS patients with mutated C90RF72 show increased oxidative stress and neurotoxicity. Ebiomedicine 50, 274-289, doi:10.1010/j.ebiom.2019.11.026 (2019).

94           Barash, U., Spyrou, A., Liu, P., Vlodavsky, E., Zhu, C., Luo, J., Su, D., Ilan, N., Forsberg-Nilsson, K., Vlodavsky, I. & Yang, X. Heparanase promotes glioma progression via enhancing CD24 expression. Int J Cancer 145, 1596-1608, doi:10.1002/ijc.32375 (2019).

95           Anavy, L., Vaknin, I., Atar, O., Amit, R. & Yakhini, Z. Data storage in DNA with fewer synthesis cycles using composite DNA letters (vol 37, pg 1229, 2019). Nat Biotechnol 37, 1237-1237, doi:10.1038/s41587-019-0281-1 (2019).

96           Singh, A. P., Fridman, Y., Holland, N., Ackerman-Lavert, M., Zananiri, R., Jaillais, Y., Henn, A. & Savaldi-Goldstein, S. Interdependent Nutrient Availability and Steroid Hormone Signals Facilitate Root Growth Plasticity. Dev Cell 46, 59-+, doi:10.1016/j.devcel.2018.06.002 (2018).

97           Shenkar, N., Shmuel, Y. & Huchon, D. The invasive ascidian Ciona robusta recorded from a Red Sea marina. Mar Biodivers 48, 2211-2214, doi:10.1007/s12526-017-0699-y (2018).

98           Shammai, A., Petreikov, M., Yeselson, Y., Faigenboim, A., Moy-Komemi, M., Cohen, S., Cohen, D., Besaulov, E., Efrati, A., Houminer, N., Bar, M., Ast, T., Schuldiner, M., Klemens, P. A. W., Neuhaus, E., Baxter, C. J., Rickett, D., Bonnet, J., White, R., Giovannoni, J. J., Levin, I. & Schaffer, A. Natural genetic variation for expression of a SWEET transporter among wild species of Solanum lycopersicum (tomato) determines the hexose composition of ripening tomato fruit. Plant J 96, 343-357, doi:10.1111/tpj.14035 (2018).

99           Shamai, Y., Alperovich, D. C., Yakhini, Z., Skorecki, K. & Tzukerman, M. Reciprocal Reprogramming of Cancer Cells and Associated Mesenchymal Stem Cells in Gastric Cancer. Stem Cells, doi:10.1002/stem.2942 (2018).

100         Segal, T., Salmon-Divon, M. & Gerlitz, G. The Heterochromatin Landscape in Migrating Cells and the Importance of H3K27me3 for Associated Transcriptome Alterations. Cells-Basel 7, doi:Artn 205 10.3390/Cells7110205 (2018).

101         Schiffer, P. H., Polsky, A. L., Cole, A. G., Camps, J. I. R., Kroiher, M., Silver, D. H., Grishkevich, V., Anavy, L., Koutsovoulos, G., Hashimshony, T. & Yanai, I. The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression. P Natl Acad Sci USA 115, 4459-4464, doi:10.1073/pnas.1720817115 (2018).

102         Ryvkin, A., Ashkenazy, H., Weiss-Ottolenghi, Y., Piller, C., Pupko, T. & Gershoni, J. M. Phage display peptide libraries: deviations from randomness and correctives. Nucleic Acids Res 46, doi:ARTN e52 10.1093/nar/gky077 (2018).

103         Reizel, Y., Sabag, O., Skversky, Y., Spiro, A., Steinberg, B., Bernstein, D., Wang, A., Kieckhaefer, J., Li, C., Pikarsky, E., Levin-Klein, R., Goren, A., Rajewsky, K., Kaestner, K. H. & Cedar, H. Postnatal DNA demethylation and its role in tissue maturation. Nat Commun 9, doi:Artn 2040 10.1038/S41467-018-04456-6 (2018).

104         Khateb, S., Kowalewski, B., Bedoni, N., Damme, M., Pollack, N., Saada, A., Obolensky, A., Ben-Yosef, T., Gross, M., Dierks, T., Banin, E., Rivolta, C. & Sharon, D. A homozygous founder missense variant in arylsulfatase G abolishes its enzymatic activity causing atypical Usher syndrome in humans. Genet Med 20, 1004-1012, doi:10.1038/gim.2017.227 (2018).

105         Katsir, L., Zhepu, R., Piasezky, A., Jiang, J. D., Sela, N., Freilich, S. & Bahar, O. Genome Sequence of "Candidatus Carsonella ruddii" Strain BT from the Psyllid Bactericera trigonica. Genome Announcements 6, doi:ARTN e01466-17 10.1128/genomeA.01466-17 (2018).

106         Katsir, L., Ruan, Z. P., Garcia, D. S., Piasezky, A., Jiang, J. D., Sela, N., Freilich, S. & Bahar, O. Genome Analysis of Haplotype D of Candidatus Liberibacter Solanacearum. Front Microbiol 9, doi:Artn 2933 10.3389/Fmicb.2018.02933 (2018).

107         Kaplan, E., Zubedat, S., Radzishevsky, I., Valenta, A. C., Rechnitz, O., Sason, H., Sajrawi, C., Bodner, O., Konno, K., Esaki, K., Derdikman, D., Yoshikawa, T., Watanabe, M., Kennedy, R. T., Billard, J. M., Avital, A. & Wolosker, H. ASCT1 (Slc1a4) transporter is a physiologic regulator of brain d-serine and neurodevelopment. Proc Natl Acad Sci U S A 115, 9628-9633, doi:10.1073/pnas.1722677115 (2018).

108         Journo, G., Tushinsky, C., Shterngas, A., Avital, N., Eran, Y., Karpuj, M. V., Frenkel-Morgenstern, M. & Shamay, M. Modulation of Cellular CpG DNA Methylation by Kaposi's Sarcoma-Associated Herpesvirus. J Virol 92, doi:10.1128/JVI.00008-18 (2018).

109         Enav, H., Kirzner, S., Lindell, D., Mandel-Gutfreund, Y. & Beja, O. Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean. Nat Commun 9, doi:Artn 4698 10.1038/S41467-018-07164-3 (2018).

110         Dalal, V., Dagan, S., Friedlander, G., Aviv, E., Bock, R., Charuvi, D., Reich, Z. & Adam, Z. Transcriptome analysis highlights nuclear control of chloroplast development in the shoot apex. Sci Rep-Uk 8, doi:Artn 8881 10.1038/S41598-018-27305-4 (2018).

111         Ben Jehuda, R., Shemer, Y. & Binah, O. Genome Editing in Induced Pluripotent Stem Cells using CRISPR/Cas9. Stem Cell Rev 14, 323-336, doi:10.1007/s12015-018-9811-3 (2018).

112         Arafat, H., Alamaru, A., Gissi, C. & Huchon, D. Extensive mitochondrial gene rearrangements in Ctenophora: insights from benthic Platyctenida. Bmc Evol Biol 18, doi:ARTN 65 10.1186/s12862-018-1186-1 (2018).

113         Zalts, H. & Yanai, I. Developmental constraints shape the evolution of the nematode mid-developmental transition. Nat Ecol Evol 1, doi:Artn 0113 10.1038/S41559-017-0113 (2017).

114         Yasin, N., Veenman, L., Singh, S., Azrad, M., Bode, J., Vainshtein, A., Caballero, B., Marek, I. & Gavish, M. Classical and Novel TSPO Ligands for the Mitochondrial TSPO Can Modulate Nuclear Gene Expression: Implications for Mitochondrial Retrograde Signaling. Int J Mol Sci 18, doi:10.3390/ijms18040786 (2017).

115         Ushakov, K., Koffler-Brill, T., Rom, A., Perl, K., Ulitsky, I. & Avraham, K. B. Genome-wide identification and expression profiling of long non-coding RNAs in auditory and vestibular systems. Sci Rep-Uk 7, doi:Artn 8637 10.1038/S41598-017-08320-3 (2017).

116         Simanovich, E., Brod, V., Rahat, M. M., Drazdov, E., Walter, M., Shakya, J. & Rahat, M. A. Inhibition of tumor growth and metastasis by EMMPRIN multiple antigenic peptide (MAP) vaccination is mediated by immune modulation. Oncoimmunology 6, e1261778, doi:10.1080/2162402X.2016.1261778 (2017).

117         Schwartz, D. A. & Lindell, D. Genetic hurdles limit the arms race between Prochlorococcus and the T7-like podoviruses infecting them. Isme J 11, 1836-1851, doi:10.1038/ismej.2017.47 (2017).

118         Schatz, D., Rosenwasser, S., Malitsky, S., Wolf, S. G., Feldmesser, E. & Vardi, A. Communication via extracellular vesicles enhances viral infection of a cosmopolitan alga. Nat Microbiol 2, 1485-1492, doi:10.1038/s41564-017-0024-3 (2017).

119         Mamrut, S., Avidan, N., Truffault, F., Staun-Ram, E., Sharshar, T., Eymard, B., Frenkian, M., Pitha, J., de Baets, M., Servais, L., Berrih-Aknin, S. & Miller, A. Methylome and transcriptome profiling in Myasthenia Gravis monozygotic twins. J Autoimmun 82, 62-73, doi:10.1016/j.jaut.2017.05.005 (2017).

120         Kalfon, R., Haas, T., Shofti, R., Moskovitz, J. D., Schwartz, O., Suss-Toby, E. & Aronheim, A. c-Jun dimerization protein 2 (JDP2) deficiency promotes cardiac hypertrophy and dysfunction in response to pressure overload. Int J Cardiol 249, 357-363, doi:10.1016/j.ijcard.2017.08.074 (2017).

121         Haramati, O., Brodov, A., Yelin, I., Atir-Lande, A., Samra, N. & Arava, Y. Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium. Sci Rep-Uk 7, doi:Artn 3037 10.1038/S41598-017-02873-Z (2017).

122         Ginzburg, N., Cohen, M. & Chipman, A. D. Factors involved in early polarization of the anterior-posterior axis in the milkweed bug Oncopeltus fasciatus. Genesis 55, doi:ARTN e23027 10.1002/dvg.23027 (2017).

123         Eliash, N., Singh, N. K., Thangarajan, S., Sela, N., Leshkowitz, D., Kamer, Y., Zaidman, I., Rafaeli, A. & Soroker, V. Chemosensing of honeybee parasite, Varroa destructor: Transcriptomic analysis. Sci Rep-Uk 7, doi:Artn 13091 10.1038/S41598-017-13167-9 (2017).

124         Avrani, S., Bolotin, E., Katz, S. & Hershberg, R. Rapid Genetic Adaptation during the First Four Months of Survival under Resource Exhaustion. Mol Biol Evol 34, 1758-1769, doi:10.1093/molbev/msx118 (2017).

125         Trainin, T., Zohar, M., Shimoni-Shor, E., Doron-Faigenboim, A., Bar-Ya'akov, I., Hatib, K., Sela, N., Holland, D. & Isaacson, T. A Unique haplotype found in apple accessions exhibiting early bud-break could serve as a marker for breeding apples with low chilling requirements. Mol Breeding 36, doi:Artn 158 10.1007/S11032-016-0575-7 (2016).

126         Shraibman, B., Kadosh, D. M., Barnea, E. & Admon, A. Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy. Mol Cell Proteomics 15, 3058-3070, doi:10.1074/mcp.M116.060350 (2016).

127         Shomer, I., Avisar, A., Desai, P., Azriel, S., Smollan, G., Belausov, N., Keller, N., Glikman, D., Maor, Y., Peretz, A., McClelland, M., Rahav, G. & Gal-Mor, O. Genetic and Phenotypic Characterization of a Salmonella enterica serovar Enteritidis Emerging Strain with Superior Intra-macrophage Replication Phenotype. Front Microbiol 7, doi:Artn 1468 10.3389/Fmicb.2016.01468 (2016).

128         Shenkar, N., Koplovitz, G., Dray, L., Gissi, C. & Huchon, D. Back to solitude: Solving the phylogenetic position of the Diazonidae using molecular and developmental characters. Mol Phylogenet Evol 100, 51-56, doi:10.1016/j.ympev.2016.04.001 (2016).

129         Shahi, P., Trebicz-Geffen, M., Nagaraja, S., Hertz, R., Alterzon-Baumel, S., Methling, K., Lalk, M., Mazumder, M., Samudrala, G. & Ankri, S. N-acetyl ornithine deacetylase is a moonlighting protein and is involved in the adaptation of Entamoeba histolytica to nitrosative stress. Sci Rep-Uk 6, doi:Artn 36323 10.1038/Srep36323 (2016).

130         Levin, S., Sela, N. & Chejanovsky, N. Two novel viruses associated with the Apis mellifera pathogenic mite Varroa destructor. Sci Rep-Uk 6, doi:Artn 37710 10.1038/Srep37710 (2016).

131         Levin, M., Anavy, L., Cole, A. G., Winter, E., Mostov, N., Khair, S., Senderovich, N., Kovalev, E., Silver, D. H., Feder, M., Fernandez-Valverde, S. L., Nakanishi, N., Simmons, D., Simakov, O., Larsson, T., Liu, S. Y., Jerafi-Vider, A., Yaniv, K., Ryan, J. F., Martindale, M. Q., Rink, J. C., Arendt, D., Degnan, S. M., Degnan, B. M., Hashimshony, T. & Yanai, I. The mid-developmental transition and the evolution of animal body plans. Nature 531, 637-+, doi:10.1038/nature16994 (2016).

132         Keness, Y. & Bisharat, N. Draft Genome Sequences of Streptococcus pneumoniae with High-Level Resistance to Respiratory Fluoroquinolones. Genome Announcements 4, doi:ARTN e00181-16 10.1128/genomeA.00181-16 (2016).

133         Hashimshony, T., Senderovich, N., Avital, G., Klochendler, A., de Leeuw, Y., Anavy, L., Gennert, D., Li, S. Q., Livak, K. J., Rozenblatt-Rosen, O., Dor, Y., Regev, A. & Yanai, I. CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. Genome Biol 17, doi:ARTN 77 10.1186/s13059-016-0938-8 (2016).

134         Golan, Y., Shirron, N., Avni, A., Shmoish, M. & Gepstein, S. Cytokinins Induce Transcriptional Reprograming and Improve Arabidopsis Plant Performance under Drought and Salt Stress Conditions. Front Env Sci-Switz 4, doi:Artn 63 10.3389/Fenvs.2016.00063 (2016).

135         Gatica, J., Tripathi, V., Green, S., Manaia, C. M., Berendonk, T., Cacace, D., Merlin, C., Kreuzinger, N., Schwartz, T., Fatta-Kassinos, D., Rizzo, L., Schwermer, C. U., Garelick, H., Jurkevitch, E. & Cytryn, E. High Throughput Analysis of Integron Gene Cassettes in Wastewater Environments. Environ Sci Technol 50, 11825-11836, doi:10.1021/acs.est.6b03188 (2016).

136         Dray, L., Neuhof, M., Diamant, A. & Huchon, D. The complete mitochondrial genome of the devil firefish Pterois miles (Bennett, 1828) (Scorpaenidae). Mitochondrial DNA A 27, 783-784, doi:10.3109/19401736.2014.945565 (2016).

137         Dray, L., Neuhof, M., Diamant, A. & Huchon, D. The complete mitochondrial genome of the gilthead seabream Sparus aurata L. (Sparidae). Mitochondrial DNA A 27, 781-782, doi:10.3109/19401736.2014.928861 (2016).

138         Carasso, E., Salmon-Divon, M., Carmeli, Y., Banin, E. & Navon-Venezia, S. Draft Genome Sequences of Two Multidrug-Resistant Extended-Spectrum-beta-Lactamase-Producing Klebsiella pneumoniae Strains Causing Bloodstream Infections. Genome Announcements 4, doi:ARTN e01533-15 10.1128/genomeA.01533-15 (2016).

139         Aviv, G., Rahav, G. & Gal-Mor, O. Horizontal Transfer of the Salmonella enterica Serovar Infantis Resistance and Virulence Plasmid pESI to the Gut Microbiota of Warm-Blooded Hosts. Mbio 7, doi:ARTN e01395-16 10.1128/mBio.01395-16 (2016).

140         Zou, H. D., Tzarfati, R., Hubner, S., Krugman, T., Fahima, T., Abbo, S., Saranga, Y. & Korol, A. B. Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars. Bmc Genomics 16, doi:Artn 777 10.1186/S12864-015-1996-0 (2015).

141         Weinberg-Shukron, A., Abu-Libdeh, A., Zhadeh, F., Carmel, L., Kogot-Levin, A., Kamal, L., Kanaan, M., Zeligson, S., Renbaum, P., Levy-Lahad, E. & Zangen, D. Combined mineralocorticoid and glucocorticoid deficiency is caused by a novel founder nicotinamide nucleotide transhydrogenase mutation that alters mitochondrial morphology and increases oxidative stress. J Med Genet 52, 636-641, doi:10.1136/jmedgenet-2015-103078 (2015).

142         Valenci, I., Yonai, L., Bar-Yaacov, D., Mishmar, D. & Ben-Zvi, A. Parkin modulates heteroplasmy of truncated mtDNA in Caenorhabditis elegans. Mitochondrion 20, 64-70, doi:10.1016/j.mito.2014.11.001 (2015).

143         Levin, L., Bar-Yaacov, D., Bouskila, A., Chorev, M., Carmel, L. & Mishmar, D. LEMONS - A Tool for the Identification of Splice Junctions in Transcriptomes of Organisms Lacking Reference Genomes. Plos One 10, doi:ARTN e0143329 10.1371/journal.pone.0143329 (2015).

144         Koton, Y., Gordon, M., Chalifa-Caspi, V. & Bisharat, N. Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships. Front Microbiol 5, doi:Artn 803 10.3389/Fmicb.2014.00803 (2015).

145         Hashimshony, T., Feder, M., Levin, M., Hall, B. K. & Yanai, I. Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. Nature 519, 219-+, doi:10.1038/nature13996 (2015).

146         Chang, E. S., Neuhof, M., Rubinstein, N. D., Diamant, A., Philippe, H., Huchon, D. & Cartwright, P. Genomic insights into the evolutionary origin of Myxozoa within Cnidaria. P Natl Acad Sci USA 112, 14912-14917, doi:10.1073/pnas.1511468112 (2015).

147         Avrani, S. & Lindell, D. Convergent evolution toward an improved growth rate and a reduced resistance range in Prochlorococcus strains resistant to phage. P Natl Acad Sci USA 112, E2191-E2200, doi:10.1073/pnas.1420347112 (2015).

148         Towfic, F., Funt, J. M., Fowler, K. D., Bakshi, S., Blaugrund, E., Artyomov, M. N., Hayden, M. R., Ladkani, D., Schwartz, R. & Zeskind, B. Comparing the biological impact of glatiramer acetate with the biological impact of a generic. Plos One 9, e83757, doi:10.1371/journal.pone.0083757 (2014).

149         Nardone, S., Sams, D. S., Reuveni, E., Getselter, D., Oron, O., Karpuj, M. & Elliott, E. DNA methylation analysis of the autistic brain reveals multiple dysregulated biological pathways. Transl Psychiatry 4, e433, doi:10.1038/tp.2014.70 (2014).

150         Mandel, T., Moreau, F., Kutsher, Y., Fletcher, J. C., Carles, C. C. & Williams, L. E. The ERECTA receptor kinase regulates Arabidopsis shoot apical meristem size, phyllotaxy and floral meristem identity. Development 141, 830-841, doi:10.1242/dev.104687 (2014).

151         Kravchik, M., Damodharan, S., Stav, R. & Arazi, T. Generation and characterization of a tomato DCL3-silencing mutant. Plant Sci 221, 81-89, doi:10.1016/j.plantsci.2014.02.007 (2014).

152         Isakov, E., Weisman-Shomer, P. & Benhar, M. Suppression of the pro-inflammatory NLRP3/interleukin-1beta pathway in macrophages by the thioredoxin reductase inhibitor auranofin. Biochim Biophys Acta 1840, 3153-3161, doi:10.1016/j.bbagen.2014.07.012 (2014).

153         Barash, U., Zohar, Y., Wildbaum, G., Beider, K., Nagler, A., Karin, N., Ilan, N. & Vlodavsky, I. Heparanase enhances myeloma progression via CXCL10 downregulation. Leukemia 28, 2178-2187, doi:10.1038/leu.2014.121 (2014).

154         Anavy, L., Levin, M., Khair, S., Nakanishi, N., Fernandez-Valverde, S. L., Degnan, B. M. & Yanai, I. BLIND ordering of large-scale transcriptomic developmental timecourses. Development 141, 1161-1166, doi:10.1242/dev.105288 (2014).

155         Silver, D. H., Ben-Elazar, S., Bogoslavsky, A. & Yanai, I. ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly. Bioinformatics 29, 1455-1457, doi:10.1093/bioinformatics/btt169 (2013).

156         Seroussi, E., Glick, G., Shirak, A., Ezra, E., Zeron, Y., Ron, M. & Weller, J. I. Maternity validation using sire-only BovineSNP50 BeadChip data. Anim Genet 44, 754-757, doi:10.1111/age.12062 (2013).

157         Scheinman, E. J., Rostoker, R. & Leroith, D. Cholesterol affects gene expression of the Jun family in colon carcinoma cells using different signaling pathways. Mol Cell Endocrinol 374, 101-107, doi:10.1016/j.mce.2013.04.011 (2013).

158         Sarig, O., Goldsher, D., Nousbeck, J., Fuchs-Telem, D., Cohen-Katsenelson, K., Iancu, T. C., Manov, I., Saada, A., Sprecher, E. & Mandel, H. Infantile mitochondrial hepatopathy is a cardinal feature of MEGDEL syndrome (3-methylglutaconic aciduria type IV with sensorineural deafness, encephalopathy and Leigh-like syndrome) caused by novel mutations in SERAC1. Am J Med Genet A 161A, 2204-2215, doi:10.1002/ajmg.a.36059 (2013).

159         Normand, R. & Yanai, I. An Introduction to High-Throughput Sequencing Experiments: Design and Bioinformatics Analysis. Deep Sequencing Data Analysis 1038, 1-26, doi:10.1007/978-1-62703-514-9_1 (2013).

160         Henig, N., Avidan, N., Mandel, I., Staun-Ram, E., Ginzburg, E., Paperna, T., Pinter, R. Y. & Miller, A. Interferon-beta induces distinct gene expression response patterns in human monocytes versus T cells. Plos One 8, e62366, doi:10.1371/journal.pone.0062366 (2013).

161         Bar-Yaacov, D., Avital, G., Levin, L., Richards, A. L., Hachen, N., Jaramillo, B. R., Nekrutenko, A., Zarivach, R. & Mishmar, D. RNA-DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA. Genome Res 23, 1789-1796, doi:10.1101/gr.161265.113 (2013).

162         Abelson, S., Shamai, Y., Berger, L., Skorecki, K. & Tzukerman, M. Niche-dependent gene expression profile of intratumoral heterogeneous ovarian cancer stem cell populations. Plos One 8, e83651, doi:10.1371/journal.pone.0083651 (2013).

163         Sukhotnik, I., Mogilner, J. G., Pollak, Y., Blumenfeld, S., Bejar, J. & Coran, A. G. PDGF-alpha stimulates intestinal epithelial cell turnover after massive small bowel resection in a rat. Am J Physiol Gastrointest Liver Physiol 302, G1274-1281, doi:10.1152/ajpgi.00532.2011 (2012).

164         Sarig, O., Nahum, S., Rapaport, D., Ishida-Yamamoto, A., Fuchs-Telem, D., Qiaoli, L., Cohen-Katsenelson, K., Spiegel, R., Nousbeck, J., Israeli, S., Borochowitz, Z. U., Padalon-Brauch, G., Uitto, J., Horowitz, M., Shalev, S. & Sprecher, E. Short stature, onychodysplasia, facial dysmorphism, and hypotrichosis syndrome is caused by a POC1A mutation. Am J Hum Genet 91, 337-342, doi:10.1016/j.ajhg.2012.06.003 (2012).

165         Sarig, O., Bercovici, S., Zoller, L., Goldberg, I., Indelman, M., Nahum, S., Israeli, S., Sagiv, N., Martinez de Morentin, H., Katz, O., Baum, S., Barzilai, A., Trau, H., Murrell, D. F., Bergman, R., Hertl, M., Rosenberg, S., Nothen, M. M., Skorecki, K., Schmidt, E., Zillikens, D., Darvasi, A., Geiger, D., Rosset, S., Ibrahim, S. M. & Sprecher, E. Population-specific association between a polymorphic variant in ST18, encoding a pro-apoptotic molecule, and pemphigus vulgaris. J Invest Dermatol 132, 1798-1805, doi:10.1038/jid.2012.46 (2012).

166         Sabehi, G., Shaulov, L., Silver, D. H., Yanai, I., Harel, A. & Lindell, D. A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans. P Natl Acad Sci USA 109, 2037-2042, doi:10.1073/pnas.1115467109 (2012).

167         Hashimshony, T., Wagner, F., Sher, N. & Yanai, I. CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification. Cell Rep 2, 666-673, doi:10.1016/j.celrep.2012.08.003 (2012).

168         Grishkevich, V., Ben-Elazar, S., Hashimshony, T., Schott, D. H., Hunter, C. P. & Yanai, I. A genomic bias for genotype-environment interactions in C. elegans. Mol Syst Biol 8, doi:Artn 587 10.1038/Msb.2012.19 (2012).

169         Fuchs-Telem, D., Sarig, O., van Steensel, M. A., Isakov, O., Israeli, S., Nousbeck, J., Richard, K., Winnepenninckx, V., Vernooij, M., Shomron, N., Uitto, J., Fleckman, P., Richard, G. & Sprecher, E. Familial pityriasis rubra pilaris is caused by mutations in CARD14. Am J Hum Genet 91, 163-170, doi:10.1016/j.ajhg.2012.05.010 (2012).

170         Nousbeck, J., Burger, B., Fuchs-Telem, D., Pavlovsky, M., Fenig, S., Sarig, O., Itin, P. & Sprecher, E. A mutation in a skin-specific isoform of SMARCAD1 causes autosomal-dominant adermatoglyphia. Am J Hum Genet 89, 302-307, doi:10.1016/j.ajhg.2011.07.004 (2011).

171         Nousbeck, J., Sarig, O., Avidan, N., Indelman, M., Bergman, R., Ramon, M., Enk, C. D. & Sprecher, E. Insulin-like growth factor-binding protein 7 regulates keratinocyte proliferation, differentiation and apoptosis. J Invest Dermatol 130, 378-387, doi:10.1038/jid.2009.265 (2010).

172         Basel-Vanagaite, L., Sarig, O., Hershkovitz, D., Fuchs-Telem, D., Rapaport, D., Gat, A., Isman, G., Shirazi, I., Shohat, M., Enk, C. D., Birk, E., Kohlhase, J., Matysiak-Scholze, U., Maya, I., Knopf, C., Peffekoven, A., Hennies, H. C., Bergman, R., Horowitz, M., Ishida-Yamamoto, A. & Sprecher, E. RIN2 deficiency results in macrocephaly, alopecia, cutis laxa, and scoliosis: MACS syndrome. Am J Hum Genet 85, 254-263, doi:10.1016/j.ajhg.2009.07.001 (2009).