1) Quality validation
2) Mapping
3) Marking duplicates
4) Realignment
5) Base quality recalibration
6) Variant calling
7) Create joint table
8) Adding annotations
9) Final Report
1) Quality validation
2) Mapping
3) Marking duplicates
4) Realignment
5) Base quality recalibration
6) Variant calling
7) Create joint table
8) Adding annotations
9) Final Report